([iter],[grp])
; DeCloning group loop
;
; SOURCE: spider/docs/techs/recon/newprogs/pub_ref_loop_declone.pam
; New ArDean Leith Jan 2009
; grp_resol removed ArDean Leith Jun 2010
; 'dala' files removed ArDean Leith Jan 2011
; New variable definitions ArDean Leith Jan 2011
; Dala removal, doc files not cloned ArDean Leith Jan 2012
;
; PURPOSE: Runs on compute nodes to copy local 'grploop files' backto master disk
;
; CALLED FROM: pub_refine_start
;
; INPUT REGISTERS:
; [iter] Alignment step iteration counter (varies with iter)
; [grp] Defocus group (varies with group)
;
; I/O Registers & files are set in: refine settings.pam
;
; '##' denotes iteration, '##+' denotes next iteration, and '***' denotes group
;
; OUTPUT FILES (SET IN: refine_settings refine_settings.pam.pam):
; [next_group_fsc] final/fscdoc_##+_*** FSC curve doc file
; [next_group_vol] work/vol##+ Next group volume
; [next_group_vol]_sub1 work/vol##+_***_sub1 Next group volume-sub1
; [next_group_vol]_sub2 work/vol##+_***_sub2 Next group volume-sub2
;
; ---------------------------------------------------------------------
[next-iter] = [iter]+1
; Copy local files back onto master disk
VM
\cp [next_group_fsc].$DATEXT [master_next_group_fsc].$DATEXT
VM
\cp [next_group_vol].$DATEXT [master_next_group_vol].$DATEXT
VM
\cp [next_group_vol]_sub1.$DATEXT [master_next_group_vol]_sub1.$DATEXT
VM
\cp [next_group_vol]_sub2.$DATEXT [master_next_group_vol]_sub2.$DATEXT
; Clear temp directory with no longer needed files
VM
\rm -r [temp_local_dir]/input [temp_local_dir]/work [temp_local_dir]/final >& /dev/null
RE
;