Usage Example - Operation: 'AP REF'

Alignment - multi-reference, rotation & shift

Procedure used: apref.spi

.OPERATION: AP REF ;   Alignment determination
.TEMPLATE FOR REFERENCE IMAGES: sav_nat_proj_83@** ;   Ref image name template (input)
.FILE NUMBERS OR SELECTION DOC. FILE NAME: 1-83 ;   List of reference images
.TRANSLATION SEARCH RANGE: 5 ;   Translation shifts
.FIRST, LAST RING & RING SKIP: 5,58,1,1 ;   First, last ring, ring skip
.REFERENCE IMAGES ANGLES DOCUMENT FILE: sav_voea_doc_83 ;   Reference angles (input)
.REFERENCE-RINGS FILE: unused ;   Reference ring file (output)
.TEMPLATE FOR IMAGE SERIES TO BE ALIGNED: sav_nat_part_stk@**;   Exp image name template (input)
.FILE NUMBERS OR SELECTION DOC. FILE NAME: 1 ;   List of Exp images
.EXPERIMENTAL IMAGES ALIGNMENT DOCUMENT FILE: * ;   Exp image angles doc file (input)
.RANGE OF PROJECTION ANGLE SEARCH & ANGLE CHANGE THRESHOLD: 0,0 ;   No angular restriction
.CHECK MIRRORED POSITIONS?, SHIFT AND ROTATE INPUT? (Y/N): Y ;   Check mirrors
.OUTPUT ALIGNMENT DOCUMENT FILE: apref_ali_doc ;   Alignment doc file (output)


REFERENCE IMAGES
(Half size) 		      EXPERIMENTAL IMAGES (Half size)
     
sav_nat_proj_83_mon       sav_nat_part_stk_mon


OUTPUT ALIGNMENT DOC FILE
apref_ali_doc