Usage Example - Operation: 'AP SCC'

Alignment - multi-reference, translation alignment

Procedure used: apscc.spi

.OPERATION: AP SCC ;   Alignment determination
.TEMPLATE FOR REFERENCE IMAGES: sav_nat_proj_83@** ;   Ref image name template (input)
.FILE NUMBERS OR SELECTION DOC. FILE NAME: 1-83 ;   List of reference images
.TRANSLATION SEARCH IN X, Y, & Z: 5, 5 ;   Translation shifts
.NORMALIZE PEAK HEIGHT (Y/N): Y ;   Normalize peak height
.TEMPLATE FOR IMAGE SERIES TO BE ALIGNED: sav_nat_part_stk@**;   Exp image name template (input)
.FILE NUMBERS OR SELECTION DOC. FILE NAME: 1 ;   List of Exp images
.OUTPUT ALIGNMENT DOCUMENT FILE: apscc_ali_doc ;   Alignment doc file (output)


REFERENCE IMAGES
(Half size) 		      EXPERIMENTAL IMAGES (Half size)
     
sav_nat_proj_83_mon       sav_nat_part_stk_mon


OUTPUT ALIGNMENT DOC FILE
apscc_ali_doc