CC MS - Cross Correlation - Masked and normalized ||

PURPOSE

Calculates cross-correlation coefficients for images under a circular mask. Coefficients are normalized. Image is padded with zeros. Works only for real images (not their Fourier transforms!). Does not work for volumes.   Example.

SEE ALSO

CC	[Cross Correlation ||]
CC N	[Cross Correlation - Normalized ||]

USAGE

.OPERATION: CC MS

.INPUT FILE: PIC001
[Enter the name of the first image file.]

.REFERENCE FILE: PIC001
[Enter the name of the second, reference image file.]

.OUTPUT FILE: CAC001
[Enter name of the file which will contain CC coeffs.]

.MASK RADIUS: 25
[Enter radius of the circular mask which will be centered at NX/2+1, NY/2+1]

.(F)ULL OR (H)ALF OUTPUT FILE: F
['F' gives a cross-correlation function file with dimensions 2*NX x 2*NY (useful for mask radius =>MAX(NX/4, NY/4).
'H' gives a cross-correlation function file with dimensions NX x NY (enough if one is interested only in lower order CCF coeffs. or mask radius is small)]

NOTES

1. See documentation on 'CC' for the location of the origin.

2. For non-masked cross-correlation function use 'CC'.

3. Command works for 2D images only.

4. Implemented by Paul Penczek.

SUBROUTINES

MCCF, MCCF_P, FMRS_2, FMRS_1, CCRS_2

CALLER

CORR1