| PDBIF | [PDB - Find information] |
| PDBPTS | [PDB - Put coordinates in SPIDER document file.] |
| PDBRT3 | [PDB - Rotate by Euler angles in 3D space] |
| PDBRT3A | [PDB - Rotate by Euler angles around arbitrary center] |
| PDBRT3L | [PDB - Rotate PDB file around line] |
| PDBSH | [PDB - SHift coordinates] |
| PDBSTP | [PDB - Create PDB file from coordinate list] |
| Variable | Example | Receives |
| First | [xcp] | X Center of gravity in PDB coordinates |
| Second | [ycp] | Y Center of gravity in PDB coordinates |
| Third | [zcp] | Z Center of gravity in PDB coordinates |
| Fourth | [xcs] | X Center of gravity in SPIDER coordinates in units of Angstroms |
| Fifth | [ycs] | Y Center of gravity in SPIDER coordinates in units of Angstroms |
| Sixth | [zcs] | Z Center of gravity in SPIDER coordinates in units of Angstroms |
| Seventh | [na] | Total numbers of counted atoms |
.INPUT FILE: img.pdb
[Enter the name of the PDB file with extension.]
NOTES