PDB IF - PDB - Find information
(1/11/14)
- PURPOSE
- To find information about PDB file, and save it in document file,
or place in register variables.
Example.
- SEE ALSO
PDBCG3 | [PDB - Calculate center of gravity] |
PDBPTS | [PDB - Put coordinates in SPIDER document file.] |
PDBRT3 | [PDB - Rotate by Euler angles in 3D space] |
PDBRT3A | [PDB - Rotate by Euler angles around arbitrary center] |
PDBRT3L | [PDB - Rotate PDB file around line] |
PDBSH | [PDB - SHift coordinates] |
PDBSTP | [PDB - Create PDB file from coordinate list] |
USEE ALSO: PDB CG3
USAGE: PDB IF [a],[b],[c],[na],[ta],[nhet]
[This operation can return up to six optional register variable:
Variable |
Example |
Receives |
First |
[a] |
Crystal unit cell constant: a |
Second |
[a] |
Crystal unit cell constant: b |
Third |
[a] |
Crystal unit cell constant: c |
Fourth |
[na] |
Total numbers of atoms |
Fifth |
[ta] |
Terminal number of atoms |
Sixth |
[nhet] |
Numbers of HET atoms |
.INPUT FILE: aaa.pdb
[Enter the name of the PDB file.
.PARAMETER DOC FILE: PDBPRM
[Enter the name for the SPIDER document file.
The lines in the document file contain:
Crystal unit cell constants: a, b and c.
Crystal unit cell angles: alpha, beta, gamma.
Origins: origx1, origx2, origx3.
Scales: scale1, scale2, scale3.
Number of atoms: total, terminal, and HET.
NOTES: 1. Prints out publication information of this PDB file, the space
group, information about data set and refinement
such as, highest and lowest resolution, R factor and
free R factor.
2. Implemented by Zhong Huang, Pawel Penczek.
SUBROUTINES: PDB
CALLER: DRIV1