PDB PTS - PDB - Put coordinates in SPIDER document file.
(1/11/14)
- PURPOSE
- Put coordinates from PDB file into a SPIDER document file.
Example.
- SEE ALSO
| PDBCG3 | [PDB - Calculate center of gravity] |
| PDBIF | [PDB - Find information] |
| PDBRT3 | [PDB - Rotate by Euler angles in 3D space] |
| PDBRT3A | [PDB - Rotate by Euler angles around arbitrary center] |
| PDBRT3L | [PDB - Rotate PDB file around line] |
| PDBSH | [PDB - SHift coordinates] |
| PDBSTP | [PDB - Create PDB file from coordinate list] |
UUSAGE: PDB PTS
.PDB INPUT FILE: aaa.pdb
[Enter the name of the PDB file with extension 'pdb']
.DOCUMENT FILE: COORD001
[Enter the name of the output SPIDER document file.
Coordinates in output file are in Angstroms.]
NOTES: 1. Terminal atoms are skipped.
2. The first three document file columns are coordinates.
3. The fourth column is IRES*10000.+VATOM. IRES and Vatom is residue
and atom iD, repectively.
4. The fifth column is temperature factors.
5. The sixth column is NR2*1000.+ISEN*10.+occupancy, NR2 is sheet
id, and isen is chain id1. Occupancy is 1 or 0 to show
atoms to be or missed in refinement.
6. The seventh column contains chain id2 followed NR2 number.
7. Implemented by Zhong Huang, Pawel A. Penczek.
SUBROUTINES: PDB
CALLER: DRIV1